Quartet

• Underthru (OmniTone) - 1999
• A Cloud of Black Birds (AUM Fidelity)
• You Be Me (Soul Note)
• Joe Morris Ensemble: Elsewhere (Homestead)
• Joe Morris-Rob Brown Quartet: Illuminate (Leo Lab)

Trio

• Antennae (AUM Fidelity)
• Symbolic Gesture (Soul Note)
• Flip & Spike (Riti)
• Human Rites (Riti)
• Wraparound (Riti)

Solo

• No Vertigo (Leo Records)

Duo

• Joe Morris/William Parker: Invisible Weave (No More Records)
• Matthew Ship Duo: Thesis (Hat Art)
• Ivo Perelman/Joe Morris: Strings (Leo Records)

Ensembles

• Joe Morris/ Karen Borca/Rob Brown/Andrea Parkins: Many Rings (Knitting Factory)
• Joe Morris/ Ken Vandermark/Hans Poppel: Like Rays (Knitting Factory)
• Joe Morris/Joe Maneri/Mat Maneri: Three Men Walking (ECM)
• Rob Brown/Whit Dickey/Joe Morris: Youniverse (Riti)

Electric

• Electric Club (AT)
• Sweatshop (Riti)
• Live at the Knitting Factory, Volume 5 (Knitting Factory)